Welcome to the iSEE COVID Hub!

powered by iSEE

Powered by iSEE

Start exploring the data with iSEE

Click on any of the figures below to start an instance of iSEE with configured for that dataset.

bcells powered by iSEE

Containing cells

monocytes powered by iSEE

Containing cells

nkcells powered by iSEE

Containing cells

tcells powered by iSEE

Containing cells

How to explore the data

iSEE delivers a fully interactive browser for the specific single cell dataset it refers to.

Every app starts with a configuration that mirrors the findings presented in the original publication of Notarbartolo et al. (Science Immunology, 2021; Aug 10;6(62):eabg5021) - PMID: 34376481 (https://pubmed.ncbi.nlm.nih.gov/34376481/), DOI: 10.1126/sciimmunol.abg5021 (https://doi.org/10.1126/sciimmunol.abg5021)

In each instance, you can follow a tour that guides you through the main findings as they are presented. At any time, you are free to change any of the defined settings to explore in depth the dataset.

About iSEE

iSEE is a Bioconductor package, jointly developed by Kevin Rue-Albrecht, Federico Marini, Charlotte Soneson, and Aaron Lun.

This set of instances of iSEE have been designed by Federico Marini, in collaboration with the team at INGM.