Welcome to the iSEE portal for the HCA Tonsil Atlas!
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Start exploring the data with iSEE
Click on any of the figures below to start an instance of iSEE with configured for that dataset.
Containing cells
Containing cells
Containing cells
How to explore the data
iSEE delivers a fully interactive browser for the specific single cell dataset it refers to.
Every app starts with a configuration that mirrors the findings presented in the original publication An Atlas of Cells in the Human Tonsil, Massoni-Badosa et al., doi: https://doi.org/10.1101/2022.06.24.497299.
In each instance, you can follow a tour that guides you through the main findings as they are presented. At any time, you are free to change any of the defined settings to explore in depth the dataset.
About iSEE
HCATonsilData is a Bioconductor package, developed by Ramon Massoni-Badosa
iSEE is a Bioconductor package, jointly developed by Kevin Rue-Albrecht, Federico Marini, Charlotte Soneson, and Aaron Lun.
This set of instances of iSEE have been designed by Federico Marini and Ramon Massoni-Badosa